Installation

Prerequisites

1. Python 3.8
2. Docker

Installing deepliif

DeepLIIF can be pip installed:

$ python3.8 -m venv venv
$ source venv/bin/activate
(venv) $ pip install git+https://github.com/nadeemlab/DeepLIIF.git

The package is composed of two parts:

1. A library that implements the core functions used to train and test DeepLIIF models.
2. A CLI to run common batch operations including training, batch testing and Torchscipt models serialization.

You can list all available commands:

(venv) $ deepliif --help
Usage: deepliif [OPTIONS] COMMAND [ARGS]...

Options:
  --help  Show this message and exit.

Commands:
  prepare-training-data  Preparing data for training
  serialize              Serialize DeepLIIF models using Torchscript
  test                   Test trained models
  train                  General-purpose training script for multi-task...